Atomic structures of TDP-43 LCD segments and insights into reversible or pathogenic aggregation

EL Guenther, Q Cao, H Trinh, J Lu… - Nature structural & …, 2018 - nature.com
EL Guenther, Q Cao, H Trinh, J Lu, MR Sawaya, D Cascio, DR Boyer, JA Rodriguez
Nature structural & molecular biology, 2018nature.com
The normally soluble TAR DNA-binding protein 43 (TDP-43) is found aggregated both in
reversible stress granules and in irreversible pathogenic amyloid. In TDP-43, the low-
complexity domain (LCD) is believed to be involved in both types of aggregation. To uncover
the structural origins of these two modes of β-sheet-rich aggregation, we have determined
ten structures of segments of the LCD of human TDP-43. Six of these segments form steric
zippers characteristic of the spines of pathogenic amyloid fibrils; four others form LARKS, the …
Abstract
The normally soluble TAR DNA-binding protein 43 (TDP-43) is found aggregated both in reversible stress granules and in irreversible pathogenic amyloid. In TDP-43, the low-complexity domain (LCD) is believed to be involved in both types of aggregation. To uncover the structural origins of these two modes of β-sheet-rich aggregation, we have determined ten structures of segments of the LCD of human TDP-43. Six of these segments form steric zippers characteristic of the spines of pathogenic amyloid fibrils; four others form LARKS, the labile amyloid-like interactions characteristic of protein hydrogels and proteins found in membraneless organelles, including stress granules. Supporting a hypothetical pathway from reversible to irreversible amyloid aggregation, we found that familial ALS variants of TDP-43 convert LARKS to irreversible aggregates. Our structures suggest how TDP-43 adopts both reversible and irreversible β-sheet aggregates and the role of mutation in the possible transition of reversible to irreversible pathogenic aggregation.
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